PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598295.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 567aa    MW: 64567 Da    PI: 4.9074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12313356755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +ErrRR+++N+++  Lr+l+P       +Kl+ a+iL  A++Y+k+Lq
  XP_013598295.1 313 LAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 356
                     68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-1710148IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.53E-14305358No hitNo description
PROSITE profilePS5088816.488306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-17309370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-15312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-16313369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10313356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MESTMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWIG CCCGGTQLIE ENGTEEFSIE  60
GCRDVMFHHP RTKSCEFLDH LPSSIPLDSG IYAETLLTNQ TGWLSESSEP GFMQETICTR  120
VLIPIPGGLV ELFATRHVAE DQNVVDFVMG NCNMLMDETV TINMMVADEV ESKPYGMLCG  180
DIHQKGSKDE EMMNLPSPYD ISTDQMRVNF LPQMSEYEAQ QHLKVKSDYH HQDLGYLPEN  240
GSKEMMGMNP FSTEDGMSVM GEPSLLVNEQ QIANDKEMNE NGTGSDCSDQ IDDEDDPKYK  300
KKTGKHSQAK NLLAERRRRK KLNDRLYALR SLVPRITKLD RASILGDAIN YVKELQIEAK  360
ELQDELEENS ETEDGANRQR GGVSLNGTVV TGFHPGISCN SNVPNLKQDV DIENANDKGQ  420
EMEPQVDVAQ LDGREFFVKV ICEYKPGGFT RLMEALDSLG LEVTNANTTR FLSLVSNVFK  480
VEKTDSEMVP AEHVRNSLLE ITRNTSRGWH DDQMATGSIQ NEKNEVDYQH YDDHHHHSGH  540
HHLNDHQMNH RAQHHHHHQH INHYQNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299320KKKTGKHSQAKNLLAERRRRKK
2314321ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5119910.0AJ511991.1 Brassica napus mRNA for bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598295.10.0PREDICTED: transcription factor ABORTED MICROSPORES
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLA0A0D3D3M20.0A0A0D3D3M2_BRAOL; Uncharacterized protein
STRINGBra002004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein